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Complete Publication List

269 results
[269] RNA folding and the origins of catalytic activity in the hairpin ribozyme. (, , , , and ), In Blood Cells Mol. Dis., . [bibtex] [pdf]
2020
[268] Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space. (, , , , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[267] Crystal structure and ligand-induced folding of the SAM/SAH riboswitch. (, , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[266] E. coli Rep helicase and RecA recombinase unwind G4 DNA and are important for resistance to G4-stabilizing ligands. (, , , , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[265] ORCA/LRWD1 Regulates Homologous Recombination at ALT-Telomeres by Modulating Heterochromatin Organization. (, , , , , , , , , , , , and ), In iScience, . [bibtex] [pdf]
[264] Just Took a DNA Test, Turns Out 100% Not That Phase. (, , and ), In Mol. Cell, . [bibtex] [pdf]
[263] Single-Molecule Analysis and Engineering of DNA Motors. (, , , and ), In Chem. Rev., . [bibtex] [pdf]
[262] Very fast CRISPR on demand. (, , , , , , and ), In Science, . [bibtex] [pdf]
2019
[261] Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition. (, , , and ), In J. Cell. Sci., . [bibtex] [pdf]
[260] Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS. (, , , , , , , and ), In Mol. Microbiol., . [bibtex] [pdf]
[259] Nanomechanics and co-transcriptional folding of Spinach and Mango. ( and ), In Nat Commun, . [bibtex] [pdf]
[258] Strategy for Compositional Analysis of the Hair Cell Mechanotransduction Complex Using TIRF Microscopy. (, , , , , and ), In Microsc. Microanal., . [bibtex] [pdf]
[257] Fight against background noise in stimulated emission depletion nanoscopy. ( and ), In Phys Biol, . [bibtex] [pdf]
[256] Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy. (, , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[255] Functional instability allows access to DNA in longer transcription Activator-Like effector (TALE) arrays. (, , and ), In Elife, . [bibtex] [pdf]
[254] Hexameric helicase G40P unwinds DNA in single base pair steps. (, , and ), In Elife, . [bibtex] [pdf]
[253] Structural Mechanisms of Cooperative DNA Binding by Bacterial Single-Stranded DNA-Binding Proteins. (, , , , , , and ), In J. Mol. Biol., . [bibtex] [pdf]
[252] Contractility kits promote assembly of the mechanoresponsive cytoskeletal network. (, , , , , and ), In J. Cell. Sci., . [bibtex] [pdf]
[251] Single molecule analysis of effects of non-canonical guide RNAs and specificity-enhancing mutations on Cas9-induced DNA unwinding. (, , , , , , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[250] Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases. (, , , , , , , and ), In Nat Commun, . [bibtex] [pdf]
[249] Junction resolving enzymes use multivalency to keep the Holliday junction dynamic. (, , , , , , , and ), In Nat. Chem. Biol., . [bibtex] [pdf]
[248] Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy. ( and ), In Nucleic Acids Res., . [bibtex] [pdf]
2018
[247] Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and ), In Nat. Methods, . [bibtex] [pdf]
[246] Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. (, , , , , , , and ), In Nat. Struct. Mol. Biol., . [bibtex] [pdf]
[245] Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. (, , , and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[244] Toward Single-Cell Single-Molecule Pull-Down. (, , , and ), In Biophys. J., . [bibtex] [pdf]
[243] Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and ), In Nat. Methods, . [bibtex] [pdf]
[242] Cdc42-dependent modulation of rigidity sensing and cell spreading in tumor repopulating cells. (, , , , , , , and ), In Biochem. Biophys. Res. Commun., . [bibtex] [pdf]
[241] Correlating Transcription Initiation and Conformational Changes by a Single-Subunit RNA Polymerase with Near Base-Pair Resolution. (, , , , , and ), In Mol. Cell, . [bibtex] [pdf]
[240] Real-time observation of DNA target interrogation and product release by the RNA-guided endonuclease CRISPR Cpf1 (Cas12a). (, , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[239] Understanding the Molecular Mechanisms of the CRISPR Toolbox Using Single Molecule Approaches. ( and ), In ACS Chem. Biol., . [bibtex] [pdf]
[238] Editorial Overview: Single-Molecule Approaches up to Difficult Challenges in Folding and Dynamics. (, and ), In J. Mol. Biol., . [bibtex] [pdf]
[237] TGFβ1 reinforces arterial aging in the vascular smooth muscle cell through a long-range regulation of the cytoskeletal stiffness. (, , , , , , , , and ), In Sci Rep, . [bibtex] [pdf]
[236] Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase. (, , , , , , , and ), In J. Biol. Chem., . [bibtex] [pdf]
[235] Single-Molecule FRET Analysis of Replicative Helicases. (, and ), In Methods Mol. Biol., . [bibtex] [pdf]
[234] The Single-Molecule Centroid Localization Algorithm Improves the Accuracy of Fluorescence Binding Assays. (, , , , , , and ), In Biochemistry, . [bibtex] [pdf]
[233] Single-Molecule Studies of ssDNA-Binding Proteins Exchange. ( and ), In Meth. Enzymol., . [bibtex] [pdf]
2017
[232] Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution. (, , , , , , , , , , , and ), In J. Cell. Sci., . [bibtex] [pdf]
[231] Single-cell analysis of early antiviral gene expression reveals a determinant of stochastic IFNB1 expression. (, , , , , , , , and ), In Integr Biol (Camb), . [bibtex] [pdf]
[230] Sphingolipids facilitate age asymmetry of membrane proteins in dividing yeast cells. (, , , , , , and ), In Mol. Biol. Cell, . [bibtex] [pdf]
[229] Metals induce transient folding and activation of the twister ribozyme. (, , , and ), In Nat. Chem. Biol., . [bibtex] [pdf]
[228] Single-molecule imaging reveals the translocation and DNA looping dynamics of hepatitis C virus NS3 helicase. (, , , , and ), In Protein Sci., . [bibtex] [pdf]
[227] Notch-Jagged complex structure implicates a catch bond in tuning ligand sensitivity. (, , , , , , , , and ), In Science, . [bibtex] [pdf]
[226] Voltage-gated sodium channels assemble and gate as dimers. (, , , , , , , , and ), In Nat Commun, . [bibtex] [pdf]
[225] Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. (, , , , , , and ), In Nat Commun, . [bibtex] [pdf]
[224] A genetically encoded fluorescent tRNA is active in live-cell protein synthesis. (, , , , , , , , , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[223] Mapping cell surface adhesion by rotation tracking and adhesion footprinting. (, and ), In Sci Rep, . [bibtex] [pdf]
[222] Flipping nanoscopy on its head. ( and ), In Science, . [bibtex] [pdf]
[221] Structural biology: Growth factor rattled out of its cage. (), In Nature, . [bibtex] [pdf]
[220] Probing Single Helicase Dynamics on Long Nucleic Acids Through Fluorescence-Force Measurement. ( and ), In Methods Mol. Biol., . [bibtex] [pdf]
2016
[219] Single-Molecule Analysis of Lipid-Protein Interactions in Crude Cell Lysates. (, , , and ), In Anal. Chem., . [bibtex] [pdf]
[218] Natural antisense RNA promotes 3' end processing and maturation of MALAT1 lncRNA. (, , , , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[217] A Chemical Controller of SNARE-Driven Membrane Fusion That Primes Vesicles for Ca(2+)-Triggered Millisecond Exocytosis. (, , , , , , , , , and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[216] Rupture force of cell adhesion ligand tethers modulates biological activities of a cell-laden hydrogel. (, , , , , , , and ), In Chem. Commun. (Camb.), . [bibtex] [pdf]
[215] Direct evidence for sequence-dependent attraction between double-stranded DNA controlled by methylation. (, , and ), In Nat Commun, . [bibtex] [pdf]
[214] Probing Nature's Nanomachines One Molecule at a Time. (), In Biophys. J., . [bibtex] [pdf]
[213] Spider Silk Peptide Is a Compact, Linear Nanospring Ideal for Intracellular Tension Sensing. (, , , , , and ), In Nano Lett., . [bibtex] [pdf]
[212] Plantazolicin is an ultra-narrow spectrum antibiotic that targets the Bacillus anthracis membrane. (, , , , , , , , and ), In ACS Infect Dis, . [bibtex] [pdf]
[211] Constructing modular and universal single molecule tension sensor using protein G to study mechano-sensitive receptors. (, , , , , and ), In Sci Rep, . [bibtex] [pdf]
[210] The light side of the force. ( and ), In Elife, . [bibtex] [pdf]
[209] Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability. (, , , , , and ), In Nat Commun, . [bibtex] [pdf]
[208] Structural dynamics of potassium-channel gating revealed by single-molecule FRET. (, , , and ), In Nat. Struct. Mol. Biol., . [bibtex] [pdf]
[207] In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. (, , and ), In Plant Cell, . [bibtex] [pdf]
[206] Nanoscale mechanics guides cellular decision making. (, , , , and ), In Integr Biol (Camb), . [bibtex] [pdf]
[205] Correction: Nanoscale mechanics guides cellular decision making. (, , , , and ), In Integr Biol (Camb), . [bibtex] [pdf]
[204] Kaposi's Sarcoma-Associated Herpesvirus Viral Interferon Regulatory Factor 4 (vIRF4) Perturbs the G1-S Cell Cycle Progression via Deregulation of the cyclin D1 Gene. (, , , , , , and ), In J. Virol., . [bibtex] [pdf]
[203] Single-molecule fluorescence microscopy of native macromolecular complexes. ( and ), In Curr. Opin. Struct. Biol., . [bibtex] [pdf]
[202] Ebola Virus Does Not Induce Stress Granule Formation during Infection and Sequesters Stress Granule Proteins within Viral Inclusions. (, , , , , , , , , , and ), In J. Virol., . [bibtex] [pdf]
[201] Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9. (, , , and ), In Nat Commun, . [bibtex] [pdf]
[200] Defining Single Molecular Forces Required for Notch Activation Using Nano Yoyo. (, , , , , , , , , and ), In Nano Lett., . [bibtex] [pdf]
2015
[199] Integrin Molecular Tension within Motile Focal Adhesions. (, , , , , and ), In Biophys. J., . [bibtex] [pdf]
[198] Effects of DNA replication on mRNA noise. (, , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[197] Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells. (, , , , and ), In Sci Rep, . [bibtex] [pdf]
[196] Single molecular force across single integrins dictates cell spreading. (, , , , , , , , , and ), In Integr Biol (Camb), . [bibtex] [pdf]
[195] Allosteric Regulation of E-Cadherin Adhesion. (, , , , , , , and ), In J. Biol. Chem., . [bibtex] [pdf]
[194] BEND3 represses rDNA transcription by stabilizing a NoRC component via USP21 deubiquitinase. (, , , , , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[193] A parameter estimation method for fluorescence lifetime data. (, , and ), In BMC Res Notes, . [bibtex] [pdf]
[192] Dual-color three-dimensional STED microscopy with a single high-repetition-rate laser. ( and ), In Opt Lett, . [bibtex] [pdf]
[191] Nucleosomes undergo slow spontaneous gaping. ( and ), In Nucleic Acids Res., . [bibtex] [pdf]
[190] The preRC protein ORCA organizes heterochromatin by assembling histone H3 lysine 9 methyltransferases on chromatin. (, , , , , , , , , and ), In Elife, . [bibtex] [pdf]
[189] Protein structure. Direct observation of structure-function relationship in a nucleic acid-processing enzyme. (, , , , , and ), In Science, . [bibtex] [pdf]
[188] Protein structure. Engineering of a superhelicase through conformational control. (, , , and ), In Science, . [bibtex] [pdf]
[187] RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA. (, , , , , , and ), In Science, . [bibtex] [pdf]
[186] Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility. (, , , and ), In Cell, . [bibtex] [pdf]
[185] Distinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs. (, , , , , , , , , , and ), In Elife, . [bibtex] [pdf]
[184] RNA fluorescence in situ hybridization in cultured mammalian cells. (, , and ), In Methods Mol. Biol., . [bibtex] [pdf]
[183] Dynamic growth and shrinkage govern the pH dependence of RecA filament stability. (, , , and ), In PLoS ONE, . [bibtex] [pdf]
2014
[182] A price to pay for relaxed substrate specificity: a comparative kinetic analysis of the class II lanthipeptide synthetases ProcM and HalM2. (, and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[181] Stoichiometry and assembly of mTOR complexes revealed by single-molecule pulldown. (, , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[180] An improved surface passivation method for single-molecule studies. (, , , , , , , , , and ), In Nat. Methods, . [bibtex] [pdf]
[179] Targeting DNA G-quadruplexes with helical small molecules. (, , , , , , , , and ), In Chembiochem, . [bibtex] [pdf]
[178] Single-molecule pull-down (SiMPull) for new-age biochemistry: methodology and biochemical applications of single-molecule pull-down (SiMPull) for probing biomolecular interactions in crude cell extracts. ( and ), In Bioessays, . [bibtex] [pdf]
[177] Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function. (, , , , and ), In Virology, . [bibtex] [pdf]
[176] Cooperative conformational transitions keep RecA filament active during ATPase cycle. (, , , , and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[175] Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4. (, , , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[174] Single-molecule methods leap ahead. (), In Nat. Methods, . [bibtex] [pdf]
[173] A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment. (, , and ), In J Chem Theory Comput, . [bibtex] [pdf]
[172] Matrix softness regulates plasticity of tumour-repopulating cells via H3K9 demethylation and Sox2 expression. (, , , , , , , , , , , , , , , , , , , , , , and ), In Nat Commun, . [bibtex] [pdf]
[171] Biophysics. Ultraslow relaxation of confined DNA. ( and ), In Science, . [bibtex] [pdf]
[170] Ultrafast redistribution of E. coli SSB along long single-stranded DNA via intersegment transfer. (, , , , and ), In J. Mol. Biol., . [bibtex] [pdf]
[169] Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA. (, , , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[168] Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA. (, , , and ), In Elife, . [bibtex] [pdf]
[167] Dynamic look at DNA unwinding by a replicative helicase. (, , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[166] Single-molecule fluorescence reveals the unwinding stepping mechanism of replicative helicase. (, , and ), In Cell Rep, . [bibtex] [pdf]
[165] Single-molecule optical spectroscopy. (, and ), In Chem Soc Rev, . [bibtex] [pdf]
[164] Protein-guided RNA dynamics during early ribosome assembly. (, , , , , , and ), In Nature, . [bibtex] [pdf]
[163] Crosstalk between the cGAS DNA sensor and Beclin-1 autophagy protein shapes innate antimicrobial immune responses. (, , , , , , , , , , and ), In Cell Host Microbe, . [bibtex] [pdf]
[162] Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor 4 (vIRF4) targets expression of cellular IRF4 and the Myc gene to facilitate lytic replication. (, , , , , , , , and ), In J. Virol., . [bibtex] [pdf]
[161] Structural mechanisms of PriA-mediated DNA replication restart. (, , , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[160] Towards a computational model of a methane producing archaeum. (, , , , , , and ), In Archaea, . [bibtex] [pdf]
[159] Relaxed rotational and scrunching changes in P266L mutant of T7 RNA polymerase reduce short abortive RNAs while delaying transition into elongation. (, , , , , and ), In PLoS ONE, . [bibtex] [pdf]
2013
[158] Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging. (, , , and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[157] Watching DNA breath one molecule at a time. ( and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[156] ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon. (, , , , and ), In EMBO Rep., . [bibtex] [pdf]
[155] Molecular mechanism of sequence-dependent stability of RecA filament. (, , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[154] A dendritic single-molecule fluorescent probe that is monovalent, photostable and minimally blinking. (, , , and ), In Nat Chem, . [bibtex] [pdf]
[153] Single-molecule approaches embrace molecular cohorts. (), In Cell, . [bibtex] [pdf]
[152] Single-molecule FRET reveals the native-state dynamics of the IκBα ankyrin repeat domain. (, , , and ), In J. Mol. Biol., . [bibtex] [pdf]
[151] PriC-mediated DNA replication restart requires PriC complex formation with the single-stranded DNA-binding protein. (, , , , , and ), In J. Biol. Chem., . [bibtex] [pdf]
[150] Defining single molecular forces required to activate integrin and notch signaling. ( and ), In Science, . [bibtex] [pdf]
[149] Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. (, , and ), In RNA, . [bibtex] [pdf]
[148] Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. (, , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[147] The SOSS1 single-stranded DNA binding complex promotes DNA end resection in concert with Exo1. (, , , , and ), In EMBO J., . [bibtex] [pdf]
[146] Single-molecule nanometry for biological physics. ( and ), In Rep Prog Phys, . [bibtex] [pdf]
[145] Direct imaging of single UvrD helicase dynamics on long single-stranded DNA. (, , , and ), In Nat Commun, . [bibtex] [pdf]
[144] The telomere capping complex CST has an unusual stoichiometry, makes multipartite interaction with G-Tails, and unfolds higher-order G-tail structures. (, , , , and ), In PLoS Genet., . [bibtex] [pdf]
2012
[143] RecA filament sliding on DNA facilitates homology search. (, and ), In Elife, . [bibtex] [pdf]
[142] Activated GTPase movement on an RNA scaffold drives co-translational protein targeting. (, , , and ), In Nature, . [bibtex] [pdf]
[141] Single-molecule FRET with total internal reflection microscopy. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[140] Prism-type total internal reflection microscopy for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[139] Objective-type total internal reflection microscopy (emission) for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[138] Objective-type total internal reflection microscopy (excitation) for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[137] Preparing sample chambers for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[136] Imaging and identifying impurities in single-molecule FRET studies. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[135] A helicase with an extra spring in its step. ( and ), In Cell, . [bibtex] [pdf]
[134] Dynamics of major histocompatibility complex class I association with the human peptide-loading complex. (, , , and ), In J. Biol. Chem., . [bibtex] [pdf]
[133] Labeling DNA (or RNA) for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[132] Labeling proteins for single-molecule FRET. ( and ), In Cold Spring Harb Protoc, . [bibtex] [pdf]
[131] Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization. ( and ), In Science, . [bibtex] [pdf]
[130] Dynamic association of ORCA with prereplicative complex components regulates DNA replication initiation. (, , , , , and ), In Mol. Cell. Biol., . [bibtex] [pdf]
[129] The influenza A virus PB2, PA, NP, and M segments play a pivotal role during genome packaging. (, , , , and ), In J. Virol., . [bibtex] [pdf]
[128] One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis. (, , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[127] Elastic coupling between RNA degradation and unwinding by an exoribonuclease. (, , , and ), In Science, . [bibtex] [pdf]
[126] Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations. (, , , , , , , and ), In J Phys Chem B, . [bibtex] [pdf]
[125] Single-molecule imaging: a collagenase pauses before embarking on a killing spree. ( and ), In Curr. Biol., . [bibtex] [pdf]
[124] A rule of seven in Watson-Crick base-pairing of mismatched sequences. (, and ), In Nat. Struct. Mol. Biol., . [bibtex] [pdf]
[123] A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins. (, , , , , , , and ), In Nat Protoc, . [bibtex] [pdf]
[122] Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging. (, , , , , and ), In Nat. Methods, . [bibtex] [pdf]
[121] Single-molecule pull-down for studying protein interactions. (, , and ), In Nat Protoc, . [bibtex] [pdf]
[120] Opening-closing dynamics of the mitochondrial transcription pre-initiation complex. (, , and ), In Nucleic Acids Res., . [bibtex] [pdf]
[119] Single-molecule views of protein movement on single-stranded DNA. (, and ), In Annu Rev Biophys, . [bibtex] [pdf]
[118] Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging. ( and ), In Annu Rev Phys Chem, . [bibtex] [pdf]
[117] Single-molecule analysis of SSB dynamics on single-stranded DNA. ( and ), In Methods Mol. Biol., . [bibtex] [pdf]
2011
[116] Antiparallel EmrE exports drugs by exchanging between asymmetric structures. (, , , , , , , and ), In Nature, . [bibtex] [pdf]
[115] Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity. (, , and ), In Nano Lett., . [bibtex] [pdf]
[114] An entirely specific type I A-kinase anchoring protein that can sequester two molecules of protein kinase A at mitochondria. (, , , , , , , , , , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[113] A single-molecule view of chaperonin cooperativity. ( and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[112] Single-molecule nanopositioning: structural transitions of a helicase-DNA complex during ATP hydrolysis. (, , , and ), In Biophys. J., . [bibtex] [pdf]
[111] Real-time observation of strand exchange reaction with high spatiotemporal resolution. (, and ), In Structure, . [bibtex] [pdf]
[110] Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding. (, , , , , , , and ), In J. Mol. Biol., . [bibtex] [pdf]
[109] Tyrosine phosphorylation enhances RAD52-mediated annealing by modulating its DNA binding. (, , , and ), In EMBO J., . [bibtex] [pdf]
[108] SSB functions as a sliding platform that migrates on DNA via reptation. (, , , , , and ), In Cell, . [bibtex] [pdf]
[107] Monovalent, clickable, uncharged, water-soluble perylenediimide-cored dendrimers for target-specific fluorescent biolabeling. (, , , , and ), In J. Am. Chem. Soc., . [bibtex] [pdf]
[106] Visualization of the nanospring dynamics of the IkappaBalpha ankyrin repeat domain in real time. (, , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[105] Editorial on nanobiology. (, and ), In Phys Chem Chem Phys, . [bibtex] [pdf]
[104] Single-molecule analysis reveals three phases of DNA degradation by an exonuclease. (, , and ), In Nat. Chem. Biol., . [bibtex] [pdf]
[103] Forcing a connection: impacts of single-molecule force spectroscopy on in vivo tension sensing. (, and ), In Biopolymers, . [bibtex] [pdf]
[102] Probing cellular protein complexes using single-molecule pull-down. (, , , , , , , , and ), In Nature, . [bibtex] [pdf]
[101] Ultrahigh-resolution optical trap with single-fluorophore sensitivity. (, and ), In Nat. Methods, . [bibtex] [pdf]
[100] Seeing a molecular machine self-renew. ( and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]
[99] Reverse-chaperoning activity of an AAA+ protein. (, , , , , , , , and ), In Biophys. J., . [bibtex] [pdf]
[98] A promiscuous DNA packaging machine from bacteriophage T4. (, , , , , and ), In PLoS Biol., . [bibtex] [pdf]
[97] Homochirality and the origin of life. Editorial of the PCCP themed issue. (, and ), In Phys Chem Chem Phys, . [bibtex] [pdf]
2010
[96] Reversible and controllable nanolocomotion of an RNA-processing machinery. (, , and ), In Nano Lett., . [bibtex] [pdf]
[95] Temperature-independent porous nanocontainers for single-molecule fluorescence studies. (, , , and ), In Anal. Chem., . [bibtex] [pdf]
[94] Single-molecule four-color FRET. (, , , , and ), In Angew. Chem. Int. Ed. Engl., . [bibtex] [pdf]
[93] Advances in mass spectrometry for biological science. (, and ), In Phys Chem Chem Phys, . [bibtex] [pdf]
[92] 5'-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase. (, , , , and ), In EMBO J., . [bibtex] [pdf]
[91] The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. (, , , , , and ), In J. Mol. Biol., . [bibtex] [pdf]
[90] Water in biological systems. (, and ), In Phys Chem Chem Phys, . [bibtex] [pdf]
[89] PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps. (, , , , , and ), In Cell, . [bibtex] [pdf]
[88] A single-vesicle content mixing assay for SNARE-mediated membrane fusion. (, , , , , , and ), In Nat Commun, . [bibtex] [pdf]
[87] Acidification of the oxygen scavenging system in single-molecule fluorescence studies: in situ sensing with a ratiometric dual-emission probe. (, and ), In Anal. Chem., . [bibtex] [pdf]
[86] Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics. (, , , , , , , , , and ), In Nature, . [bibtex] [pdf]
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[1] Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. (, , , , and ), In Proc. Natl. Acad. Sci. U.S.A., . [bibtex] [pdf]