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| [276] | Increasing kinase domain proximity promotes MST2 autophosphorylation during Hippo signaling. (Tran, T., Mitra, J., Ha, T. and Kavran, J. M.), In J Biol Chem, 2020. |
| [275] | Force-dependent trans-endocytosis by breast cancer cells depletes costimulatory receptor CD80 and attenuates T cell activation. (Park, S., Shi, Y., Kim, B. C., Jo, M. H., Cruz, L. O., Gou, Z., Ha, T., Lu, L. F., Reich, D. H. and Chen, Y.), In Biosens Bioelectron, 2020. |
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| [271] | Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning E. coli Sugar Shock Response. (Bianchi, D. M., Brier, T. A., Poddar, A., Azam, M. S., Vanderpool, C. K., Ha, T. and Luthey-Schulten, Z.), In Front Mol Biosci, 2020. |
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| [266] | Very fast CRISPR on demand. (), In Science, 2020. |
| [265] | Just Took a DNA Test, Turns Out 100% Not That Phase. (Gitler, A. D., Shorter, J., Ha, T. and Myong, S.), In Mol Cell, 2020. |
| [264] | Single-Molecule Analysis and Engineering of DNA Motors. (Mohapatra, S., Lin, C. T., Feng, X. A., Basu, A. and Ha, T.), In Chem Rev, 2020. |
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| [257] | Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy. (Mitra, J. and Ha, T.), In Nucleic Acids Res, 2019. |
| [256] | Hexameric helicase G40P unwinds DNA in single base pair steps. (), In Elife, 2019. |
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| [228] | Structural biology: Growth factor rattled out of its cage. (), In Nature, 2017. |
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| [207] | Ebola Virus Does Not Induce Stress Granule Formation during Infection and Sequesters Stress Granule Proteins within Viral Inclusions. (Nelson, E. V., Schmidt, K. M., Deflubé, L. R., Doğanay, S., Banadyga, L., Olejnik, J., Hume, A. J., Ryabchikova, E., Ebihara, H., Kedersha, N., Ha, T. and Mühlberger, E.), In J Virol, 2016. |
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| [202] | In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. (), In Plant Cell, 2016. |
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| [198] | Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells. (), In Sci Rep, 2015. |
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| [189] | Nucleosomes undergo slow spontaneous gaping. (Ngo, T. T. and Ha, T.), In Nucleic Acids Res, 2015. |
| [188] | RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA. (), In Science, 2015. |
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| [157] | ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon. (Patel, J. R., Jain, A., Chou, Y. Y., Baum, A., Ha, T. and García-Sastre, A.), In EMBO Rep, 2013. |
| [156] | Molecular mechanism of sequence-dependent stability of RecA filament. (Kim, S. H., Joo, C., Ha, T. and Kim, D.), In Nucleic Acids Res, 2013. |
| [155] | Single-molecule approaches embrace molecular cohorts. (), In Cell, 2013. |
| [154] | A dendritic single-molecule fluorescent probe that is monovalent, photostable and minimally blinking. (), In Nat Chem, 2013. |
| [153] | Single-molecule FRET reveals the native-state dynamics of the IκBα ankyrin repeat domain. (Lamboy, J. A., Kim, H., Dembinski, H., Ha, T. and Komives, E. A.), In J Mol Biol, 2013. |
| [152] | PriC-mediated DNA replication restart requires PriC complex formation with the single-stranded DNA-binding protein. (Wessel, S. R., Marceau, A. H., Massoni, S. C., Zhou, R., Ha, T., Sandler, S. J. and Keck, J. L.), In J Biol Chem, 2013. |
| [151] | Defining single molecular forces required to activate integrin and notch signaling. (), In Science, 2013. |
| [150] | Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. (), In RNA, 2013. |
| [149] | The SOSS1 single-stranded DNA binding complex promotes DNA end resection in concert with Exo1. (Yang, S. H., Zhou, R., Campbell, J., Chen, J., Ha, T. and Paull, T. T.), In EMBO J, 2013. |
| [148] | Single-molecule nanometry for biological physics. (), In Rep Prog Phys, 2013. |
| [147] | Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. (Lai, Y., Diao, J., Liu, Y., Ishitsuka, Y., Su, Z., Schulten, K., Ha, T. and Shin, Y. K.), In Proc Natl Acad Sci U S A, 2013. |
| [146] | Direct imaging of single UvrD helicase dynamics on long single-stranded DNA. (), In Nat Commun, 2013. |
| [145] | The telomere capping complex CST has an unusual stoichiometry, makes multipartite interaction with G-Tails, and unfolds higher-order G-tail structures. (Lue, N. F., Zhou, R., Chico, L., Mao, N., Steinberg-Neifach, O. and Ha, T.), In PLoS Genet, 2013. |
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| [143] | Prism-type total internal reflection microscopy for single-molecule FRET. (), In Cold Spring Harb Protoc, 2012. |
| [142] | RecA filament sliding on DNA facilitates homology search. (), In Elife, 2012. |
| [141] | Activated GTPase movement on an RNA scaffold drives co-translational protein targeting. (), In Nature, 2012. |
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| [139] | Objective-type total internal reflection microscopy (excitation) for single-molecule FRET. (), In Cold Spring Harb Protoc, 2012. |
| [138] | Imaging and identifying impurities in single-molecule FRET studies. (), In Cold Spring Harb Protoc, 2012. |
| [137] | Preparing sample chambers for single-molecule FRET. (), In Cold Spring Harb Protoc, 2012. |
| [136] | A helicase with an extra spring in its step. (), In Cell, 2012. |
| [135] | Labeling proteins for single-molecule FRET. (), In Cold Spring Harb Protoc, 2012. |
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| [133] | Dynamics of major histocompatibility complex class I association with the human peptide-loading complex. (Panter, M. S., Jain, A., Leonhardt, R. M., Ha, T. and Cresswell, P.), In J Biol Chem, 2012. |
| [132] | Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization. (), In Science, 2012. |
| [131] | Dynamic association of ORCA with prereplicative complex components regulates DNA replication initiation. (Shen, Z., Chakraborty, A., Jain, A., Giri, S., Ha, T., Prasanth, K. V. and Prasanth, S. G.), In Mol Cell Biol, 2012. |
| [130] | The influenza A virus PB2, PA, NP, and M segments play a pivotal role during genome packaging. (Gao, Q., Chou, Y. Y., Doğanay, S., Vafabakhsh, R., Ha, T. and Palese, P.), In J Virol, 2012. |
| [129] | Elastic coupling between RNA degradation and unwinding by an exoribonuclease. (), In Science, 2012. |
| [128] | Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations. (), In J Phys Chem B, 2012. |
| [127] | Single-molecule imaging: a collagenase pauses before embarking on a killing spree. (Lee, G. and Ha, T.), In Curr Biol, 2012. |
| [126] | One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis. (Chou, Y. Y., Vafabakhsh, R., Doğanay, S., Gao, Q., Ha, T. and Palese, P.), In Proc Natl Acad Sci U S A, 2012. |
| [125] | A rule of seven in Watson-Crick base-pairing of mismatched sequences. (Cisse, I. I., Kim, H. and Ha, T.), In Nat Struct Mol Biol, 2012. |
| [124] | A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins. (), In Nat Protoc, 2012. |
| [123] | Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging. (Shi, X., Jung, Y., Lin, L. J., Liu, C., Wu, C., Cann, I. K. and Ha, T.), In Nat Methods, 2012. |
| [122] | Single-molecule pull-down for studying protein interactions. (), In Nat Protoc, 2012. |
| [121] | Opening-closing dynamics of the mitochondrial transcription pre-initiation complex. (Kim, H., Tang, G. Q., Patel, S. S. and Ha, T.), In Nucleic Acids Res, 2012. |
| [120] | Single-molecule analysis of SSB dynamics on single-stranded DNA. (Zhou, R. and Ha, T.), In Methods Mol Biol, 2012. |
| [119] | Single-molecule views of protein movement on single-stranded DNA. (), In Annu Rev Biophys, 2012. |
| [118] | Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging. (), In Annu Rev Phys Chem, 2012. |
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| [117] | Antiparallel EmrE exports drugs by exchanging between asymmetric structures. (), In Nature, 2011. |
| [116] | Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity. (Zhou, R., Kunzelmann, S., Webb, M. R. and Ha, T.), In Nano Lett, 2011. |
| [115] | An entirely specific type I A-kinase anchoring protein that can sequester two molecules of protein kinase A at mitochondria. (Means, C. K., Lygren, B., Langeberg, L. K., Jain, A., Dixon, R. E., Vega, A. L., Gold, M. G., Petrosyan, S., Taylor, S. S., Murphy, A. N., Ha, T., Santana, L. F., Tasken, K. and Scott, J. D.), In Proc Natl Acad Sci U S A, 2011. |
| [114] | A single-molecule view of chaperonin cooperativity. (Ha, T. and Myong, S.), In Proc Natl Acad Sci U S A, 2011. |
| [113] | Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding. (Jia, H., Korolev, S., Niedziela-Majka, A., Maluf, N. K., Gauss, G. H., Myong, S., Ha, T., Waksman, G. and Lohman, T. M.), In J Mol Biol, 2011. |
| [112] | Single-molecule nanopositioning: structural transitions of a helicase-DNA complex during ATP hydrolysis. (Balci, H., Arslan, S., Myong, S., Lohman, T. M. and Ha, T.), In Biophys J, 2011. |
| [111] | Real-time observation of strand exchange reaction with high spatiotemporal resolution. (), In Structure, 2011. |
| [110] | Monovalent, clickable, uncharged, water-soluble perylenediimide-cored dendrimers for target-specific fluorescent biolabeling. (Yang, S. K., Shi, X., Park, S., Doganay, S., Ha, T. and Zimmerman, S. C.), In J Am Chem Soc, 2011. |
| [109] | Tyrosine phosphorylation enhances RAD52-mediated annealing by modulating its DNA binding. (Honda, M., Okuno, Y., Yoo, J., Ha, T. and Spies, M.), In EMBO J, 2011. |
| [108] | SSB functions as a sliding platform that migrates on DNA via reptation. (), In Cell, 2011. |
| [107] | Visualization of the nanospring dynamics of the IkappaBalpha ankyrin repeat domain in real time. (Lamboy, J. A., Kim, H., Lee, K. S., Ha, T. and Komives, E. A.), In Proc Natl Acad Sci U S A, 2011. |
| [106] | Editorial on nanobiology. (), In Phys Chem Chem Phys, 2011. |
| [105] | Single-molecule analysis reveals three phases of DNA degradation by an exonuclease. (Lee, G., Yoo, J., Leslie, B. J. and Ha, T.), In Nat Chem Biol, 2011. |
| [104] | Forcing a connection: impacts of single-molecule force spectroscopy on in vivo tension sensing. (), In Biopolymers, 2011. |
| [103] | Probing cellular protein complexes using single-molecule pull-down. (), In Nature, 2011. |
| [102] | Ultrahigh-resolution optical trap with single-fluorophore sensitivity. (Comstock, M. J., Ha, T. and Chemla, Y. R.), In Nat Methods, 2011. |
| [101] | Reverse-chaperoning activity of an AAA+ protein. (Liu, C., McKinney, M. C., Chen, Y. H., Earnest, T. M., Shi, X., Lin, L. J., Ishino, Y., Dahmen, K., Cann, I. K. and Ha, T.), In Biophys J, 2011. |
| [100] | Seeing a molecular machine self-renew. (Shi, X. and Ha, T.), In Proc Natl Acad Sci U S A, 2011. |
| [99] | A promiscuous DNA packaging machine from bacteriophage T4. (Zhang, Z., Kottadiel, V. I., Vafabakhsh, R., Dai, L., Chemla, Y. R., Ha, T. and Rao, V. B.), In PLoS Biol, 2011. |
| [98] | Homochirality and the origin of life. Editorial of the PCCP themed issue. (), In Phys Chem Chem Phys, 2011. |
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| [96] | Single-molecule four-color FRET. (Lee, J., Lee, S., Ragunathan, K., Joo, C., Ha, T. and Hohng, S.), In Angew Chem Int Ed Engl, 2010. |
| [95] | Reversible and controllable nanolocomotion of an RNA-processing machinery. (Lee, G., Hartung, S., Hopfner, K. P. and Ha, T.), In Nano Lett, 2010. |
| [94] | Advances in mass spectrometry for biological science. (), In Phys Chem Chem Phys, 2010. |
| [93] | 5'-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase. (Tomko, E. J., Jia, H., Park, J., Maluf, N. K., Ha, T. and Lohman, T. M.), In EMBO J, 2010. |
| [92] | The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. (Trabuco, L. G., Schreiner, E., Eargle, J., Cornish, P., Ha, T., Luthey-Schulten, Z. and Schulten, K.), In J Mol Biol, 2010. |
| [91] | Water in biological systems. (), In Phys Chem Chem Phys, 2010. |
| [90] | A single-vesicle content mixing assay for SNARE-mediated membrane fusion. (), In Nat Commun, 2010. |
| [89] | PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps. (), In Cell, 2010. |
| [88] | Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics. (), In Nature, 2010. |
| [87] | Acidification of the oxygen scavenging system in single-molecule fluorescence studies: in situ sensing with a ratiometric dual-emission probe. (Shi, X., Lim, J. and Ha, T.), In Anal Chem, 2010. |
| [86] | Insight into helicase mechanism and function revealed through single-molecule approaches. (Yodh, J. G., Schlierf, M. and Ha, T.), In Q Rev Biophys, 2010. |
| [85] | Inching over hurdles: how DNA helicases move on crowded lattices. (), In Cell Cycle, 2010. |
| [84] | Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes. (Grimme, J. M., Honda, M., Wright, R., Okuno, Y., Rothenberg, E., Mazin, A. V., Ha, T. and Spies, M.), In Nucleic Acids Res, 2010. |
| [83] | A comparative study of multivariate and univariate hidden Markov modelings in time-binned single-molecule FRET data analysis. (), In J Phys Chem B, 2010. |
| [82] | Biomolecular structures: from isolated molecules to the cell crowded medium. (), In Phys Chem Chem Phys, 2010. |
| [81] | Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine. (), In Biochemistry, 2010. |
| [80] | Single-Vesicle Fusion Assay Reveals Munc18-1 Binding to the SNARE Core Is Sufficient for Stimulating Membrane Fusion. (), In ACS Chem Neurosci, 2010. |
| [79] | Stepwise translocation of nucleic acid motors. (Myong, S. and Ha, T.), In Curr Opin Struct Biol, 2010. |
| [78] | Force-fluorescence spectroscopy at the single-molecule level. (Zhou, R., Schlierf, M. and Ha, T.), In Methods Enzymol, 2010. |
| [77] | Single-molecule FRET analysis of helicase functions. (Rothenberg, E. and Ha, T.), In Methods Mol Biol, 2010. |
| [76] | Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy. (Okumus, B. and Ha, T.), In Methods Mol Biol, 2010. |
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| [74] | Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase. (Tang, G. Q., Roy, R., Bandwar, R. P., Ha, T. and Patel, S. S.), In Proc Natl Acad Sci U S A, 2009. |
| [73] | SSB protein diffusion on single-stranded DNA stimulates RecA filament formation. (), In Nature, 2009. |
| [72] | Single molecule nanocontainers made porous using a bacterial toxin. (Okumus, B., Arslan, S., Fengler, S. M., Myong, S. and Ha, T.), In J Am Chem Soc, 2009. |
| [71] | Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase. (Honda, M., Park, J., Pugh, R. A., Ha, T. and Spies, M.), In Mol Cell, 2009. |
| [70] | G-quadruplex DNA bound by a synthetic ligand is highly dynamic. (Jena, P. V., Shirude, P. S., Okumus, B., Laxmi-Reddy, K., Godde, F., Huc, I., Balasubramanian, S. and Ha, T.), In J Am Chem Soc, 2009. |
| [69] | C2AB: a molecular glue for lipid vesicles with a negatively charged surface. (), In Langmuir, 2009. |
| [68] | Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation. (Sorokina, M., Koh, H. R., Patel, S. S. and Ha, T.), In J Am Chem Soc, 2009. |
| [67] | Photonics: How nanocrystals lost their blink. (), In Nature, 2009. |
| [66] | DNA nanotechnology: a nanomachine goes live. (), In Nat Nanotechnol, 2009. |
| [65] | Following movement of the L1 stalk between three functional states in single ribosomes. (Cornish, P. V., Ermolenko, D. N., Staple, D. W., Hoang, L., Hickerson, R. P., Noller, H. F. and Ha, T.), In Proc Natl Acad Sci U S A, 2009. |
| [64] | BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation. (Yodh, J. G., Stevens, B. C., Kanagaraj, R., Janscak, P. and Ha, T.), In EMBO J, 2009. |
| [63] | Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA. (), In Science, 2009. |
| [62] | Multimodal optical sensing and analyte specificity using single-walled carbon nanotubes. (), In Nat Nanotechnol, 2009. |
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| [60] | Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction. (Gack, M. U., Kirchhofer, A., Shin, Y. C., Inn, K. S., Liang, C., Cui, S., Myong, S., Ha, T., Hopfner, K. P. and Jung, J. U.), In Proc Natl Acad Sci U S A, 2008. |
| [59] | Engineering of functional replication protein a homologs based on insights into the evolution of oligonucleotide/oligosaccharide-binding folds. (Lin, Y., Lin, L. J., Sriratana, P., Coleman, K., Ha, T., Spies, M. and Cann, I. K.), In J Bacteriol, 2008. |
| [58] | Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. (Iqbal, A., Arslan, S., Okumus, B., Wilson, T. J., Giraud, G., Norman, D. G., Ha, T. and Lilley, D. M.), In Proc Natl Acad Sci U S A, 2008. |
| [57] | The SNARE complex from yeast is partially unstructured on the membrane. (), In Structure, 2008. |
| [56] | Complexin and Ca2+ stimulate SNARE-mediated membrane fusion. (Yoon, T. Y., Lu, X., Diao, J., Lee, S. M., Ha, T. and Shin, Y. K.), In Nat Struct Mol Biol, 2008. |
| [55] | A practical guide to single-molecule FRET. (Roy, R., Hohng, S. and Ha, T.), In Nat Methods, 2008. |
| [54] | Spontaneous intersubunit rotation in single ribosomes. (Cornish, P. V., Ermolenko, D. N., Noller, H. F. and Ha, T.), In Mol Cell, 2008. |
| [53] | Transcription initiation in a single-subunit RNA polymerase proceeds through DNA scrunching and rotation of the N-terminal subdomains. (Tang, G. Q., Roy, R., Ha, T. and Patel, S. S.), In Mol Cell, 2008. |
| [52] | Branch migration enzyme as a Brownian ratchet. (Rasnik, I., Jeong, Y. J., McKinney, S. A., Rajagopal, V., Patel, S. S. and Ha, T.), In EMBO J, 2008. |
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| [50] | Dissecting metal ion-dependent folding and catalysis of a single DNAzyme. (Kim, H. K., Rasnik, I., Liu, J., Ha, T. and Lu, Y.), In Nat Chem Biol, 2007. |
| [49] | How directional translocation is regulated in a DNA helicase motor. (Yu, J., Ha, T. and Schulten, K.), In Biophys J, 2007. |
| [48] | MCM forked substrate specificity involves dynamic interaction with the 5'-tail. (Rothenberg, E., Trakselis, M. A., Bell, S. D. and Ha, T.), In J Biol Chem, 2007. |
| [47] | Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction. (), In Science, 2007. |
| [46] | Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase. (), In Science, 2007. |
| [45] | Fueling protein DNA interactions inside porous nanocontainers. (Cisse, I., Okumus, B., Joo, C. and Ha, T.), In Proc Natl Acad Sci U S A, 2007. |
| [44] | Dynamic structural rearrangements between DNA binding modes of E. coli SSB protein. (Roy, R., Kozlov, A. G., Lohman, T. M. and Ha, T.), In J Mol Biol, 2007. |
| [43] | Need for speed: mechanical regulation of a replicative helicase. (), In Cell, 2007. |
| [42] | Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene c-kit. (Shirude, P. S., Okumus, B., Ying, L., Ha, T. and Balasubramanian, S.), In J Am Chem Soc, 2007. |
| [41] | A survey of single-molecule techniques in chemical biology. (Cornish, P. V. and Ha, T.), In ACS Chem Biol, 2007. |
| [40] | Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA. (Arluison, V., Hohng, S., Roy, R., Pellegrini, O., Régnier, P. and Ha, T.), In Nucleic Acids Res, 2007. |
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| [39] | Multiple intermediates in SNARE-induced membrane fusion. (Yoon, T. Y., Okumus, B., Zhang, F., Shin, Y. K. and Ha, T.), In Proc Natl Acad Sci U S A, 2006. |
| [38] | Nonblinking and long-lasting single-molecule fluorescence imaging. (Rasnik, I., McKinney, S. A. and Ha, T.), In Nat Methods, 2006. |
| [37] | Methanosarcina acetivorans flap endonuclease 1 activity is inhibited by a cognate single-stranded-DNA-binding protein. (Lin, Y., Guzman, C. E., McKinney, M. C., Nair, S. K., Ha, T. and Cann, I. K.), In J Bacteriol, 2006. |
| [36] | Structure-based model of the stepping motor of PcrA helicase. (Yu, J., Ha, T. and Schulten, K.), In Biophys J, 2006. |
| [35] | Analysis of single-molecule FRET trajectories using hidden Markov modeling. (McKinney, S. A., Joo, C. and Ha, T.), In Biophys J, 2006. |
| [34] | Real-time observation of RecA filament dynamics with single monomer resolution. (), In Cell, 2006. |
| [33] | Defocused orientation and position imaging (DOPI) of myosin V. (Toprak, E., Enderlein, J., Syed, S., McKinney, S. A., Petschek, R. G., Ha, T., Goldman, Y. E. and Selvin, P. R.), In Proc Natl Acad Sci U S A, 2006. |
| [32] | Bridging conformational dynamics and function using single-molecule spectroscopy. (), In Structure, 2006. |
| [31] | Single molecule nanometronome. (Buranachai, C., McKinney, S. A. and Ha, T.), In Nano Lett, 2006. |
| [30] | RNA folding and the origins of catalytic activity in the hairpin ribozyme. (Wilson, T. J., Nahas, M., Araki, L., Harusawa, S., Ha, T. and Lilley, D. M.), In Blood Cells Mol Dis, 2006. |
| [29] | Unraveling helicase mechanisms one molecule at a time. (Rasnik, I., Myong, S. and Ha, T.), In Nucleic Acids Res, 2006. |
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| [27] | Repetitive shuttling of a motor protein on DNA. (), In Nature, 2005. |
| [26] | Surfaces and orientations: much to FRET about? (Rasnik, I., McKinney, S. A. and Ha, T.), In Acc Chem Res, 2005. |
| [25] | Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model. (Balci, H., Ha, T., Sweeney, H. L. and Selvin, P. R.), In Biophys J, 2005. |
| [24] | Single-molecule quantum-dot fluorescence resonance energy transfer. (), In Chemphyschem, 2005. |
| [23] | Observing spontaneous branch migration of Holliday junctions one step at a time. (McKinney, S. A., Freeman, A. D., Lilley, D. M. and Ha, T.), In Proc Natl Acad Sci U S A, 2005. |
| [22] | The euryarchaeota, nature's medium for engineering of single-stranded DNA-binding proteins. (Robbins, J. B., McKinney, M. C., Guzman, C. E., Sriratana, B., Fitz-Gibbon, S., Ha, T. and Cann, I. K.), In J Biol Chem, 2005. |
| [21] | Stereospecific effects determine the structure of a four-way DNA junction. (Liu, J., Déclais, A. C., McKinney, S. A., Ha, T., Norman, D. G. and Lilley, D. M.), In Chem Biol, 2005. |
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| [19] | Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic. (Okumus, B., Wilson, T. J., Lilley, D. M. and Ha, T.), In Biophys J, 2004. |
| [18] | Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy. (Joo, C., McKinney, S. A., Lilley, D. M. and Ha, T.), In J Mol Biol, 2004. |
| [17] | Single-molecule three-color FRET. (Hohng, S., Joo, C. and Ha, T.), In Biophys J, 2004. |
| [16] | Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy. (), In Biochemistry, 2004. |
| [15] | Single-molecule high-resolution imaging with photobleaching. (Gordon, M. P., Ha, T. and Selvin, P. R.), In Proc Natl Acad Sci U S A, 2004. |
| [14] | Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. (Murphy, M. C., Rasnik, I., Cheng, W., Lohman, T. M. and Ha, T.), In Biophys J, 2004. |
| [13] | Conformational flexibility of four-way junctions in RNA. (Hohng, S., Wilson, T. J., Tan, E., Clegg, R. M., Lilley, D. M. and Ha, T.), In J Mol Biol, 2004. |
| [12] | Functional analysis of multiple single-stranded DNA-binding proteins from Methanosarcina acetivorans and their effects on DNA synthesis by DNA polymerase BI. (Robbins, J. B., Murphy, M. C., White, B. A., Mackie, R. I., Ha, T. and Cann, I. K.), In J Biol Chem, 2004. |
| [11] | DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes. (Rasnik, I., Myong, S., Cheng, W., Lohman, T. M. and Ha, T.), In J Mol Biol, 2004. |
| [10] | Near-complete suppression of quantum dot blinking in ambient conditions. (Hohng, S. and Ha, T.), In J Am Chem Soc, 2004. |
| [9] | Discrete and heterogeneous rotational dynamics of single membrane probe dyes in gel phase supported lipid bilayer. (), In J Chem Phys, 2004. |
| [8] | Conformational model of the Holliday junction transition deduced from molecular dynamics simulations. (Yu, J., Ha, T. and Schulten, K.), In Nucleic Acids Res, 2004. |
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| [6] | Photodestruction intermediates probed by an adjacent reporter molecule. (Ha, T. and Xu, J.), In Phys Rev Lett, 2003. |
| [5] | Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. (), In Science, 2003. |
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| [2] | Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. (), In Nature, 2002. |
| [1] | Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. (Kim, H. D., Nienhaus, G. U., Ha, T., Orr, J. W., Williamson, J. R. and Chu, S.), In Proc Natl Acad Sci U S A, 2002. |
